Claisse JT, M Kienzle, ME Bushnell, DJ Shafer & J Parrish (2009) Habitat and sex specific life history patterns of yellow tang, Zebrasoma flavescens, with implications for fisheries management using protected areas. Marine Ecology Progress Series 389: 245-255. Supplement
Shafer JL (2008) Agent-based Simulation of a Recreational Coral Reef Fishery: Linking Ecological and Social Dynamics. (abstract) Proceedings of the 11th International Coral Reef Symposium: 171
Shafer JL (2007) Agent-based Simulation of a Recreational Coral Reef Fishery: Linking Ecological and Social Dynamics. Doctoral Dissertation, University of Hawaii, 198 pp.
Wilcox B, K Duin, J Shafer & D Shafer (2004) Results of the Fishing Discussion Group Process, Fall 2003: Fishing in the Proposed Northwestern Hawaiian Islands National Marine Sanctuary. Prepared for U.S. Department of Commerce, National Oceanographic and Atmospheric Administration, National Marine Sanctuary Program, Northwestern Hawaiian Islands Coral Reef Ecosystem Reserve. Prepared by Sustainable Resources Group Intn’l, Inc.
Wilcox B, K Duin, J Shafer & D Shafer (2004) Supplementary Notes on Decision Criteria, Information Synthesis, and Findings: Fishing in the Proposed Northwestern Hawaiian Islands National Marine Sanctuary. Prepared by Sustainable Resources Group Intn’l, Inc.
Basch L, DJ Shafer, W Walsh & J Eble (2003) Recruitment Dynamics And Early Life History Strategies Of Key Herbivorous Coral Reef Fishes In A Hawaiian MPA Network. Abstracts 84th Meeting Western Society of Naturalists, Long Beach, CA November 2003
Shafer JL, DJ Shafer, KN Duin & HM Reed (2002) MCBH Coral Reef Ecosystem Management Study, Final Report. Prepared for Marine Corps Base Hawaii through Naval Facilities Engineering Service Center. Prepared by Sustainable Resources Group Intn’l, Inc.
Radtke RL, RA Kinzie III & DJ Shafer (2001) Temporal and spatial variation in length of larval life and size at settlement of the endemic Hawaiian amphidromous goby, Lentipes concolor. Journal of Fish Biology 59: 928-938
Ridgley M, JL Frederick (Shafer) & R Dunsmore (2000) Uncertainty, conflict and the design of fishery management areas: An optimization model. (abstract) Proceedings of the 9th International Coral Reef Symposium: 208
Spencer K, DJ Shafer, EH DeCarlo & RW Gauldie (2000) Stable lead isotope ratios from petrol-lead additives in fish otoliths: a potential nursery ground stock marker. Comparative Biochemistry and Physiology 127: 273-284
Shafer DJ (2000) Evaluation of periodic and aperiodic otolith structure and somatic-otolith scaling for use in reconstruction of the early life history of a tropical marine goby, Bathygobius coalitus. Marine Ecology Progress Series 199: 217-229
Shafer DJ (2000) Small changes in tropical ocean temperature can significantly influence reef fish early life history (abstract). Proceedings of the 9th International Coral Reef Symposium: 42
Katayama S, RL Radtke, M Omori & DJ Shafer (2000) Coexistence of anadromous and resident alternative life history strategies of pond smelt, Hypomesus nipponensis, in Lake Ogawara, as determined by structural and chemical otolith analyses. Environmental Biology of Fishes 58: 195-201
Shafer DJ (1998) Early life history growth and settlement dynamics of a tropical reef fish (Gobiidae: Bathygobius coalitus). PhD Dissertation, Department of Zoology, University of Hawaii
Frederick JL (1997) Evaluation of fluorescent elastomer injection for marking small fish. Bulletin of Marine Science 61(2): 399-408
Frederick JL (1997) Post-settlement movement of coral reef fishes and bias in early survival estimates. Marine Ecology Progress Series 50:65-74
Frederick JL (1996) Movement and early survivorship of juvenile coral reef fishes on artificial patch reefs in Hanalei Bay, Kauai. (abstract). Pacific Science 50:240
Shafer DJ (1996) Spatial settlement patterns and ontogenetic habitat shifts of the tropical marine goby, Bathygobius coalitus, in intertidal zones (abstract). Pacific Science 50: 247
McClaran MP, PO Ang Jr, A Capurro, DH Deutschman, DJ Shafer & J Guarini (1995) Interpreting explanatory processes for time series patterns: lessons from three time series. In: Powell TM, Steele JH (eds), Ecological Time Series. Chapman & Hall, New York, p 465-482
Friedlander AM, RC DeFelice, JD Parrish, and JL Frederick (1995) Habitat resources and recreational fish populations at Hanalei Bay, Kauai. Project Report by the Hawaii Cooperative Fishery Research Unit to Hawaii Department of Land and Natural Resources, Division of Aquatic Resources. 296 pp
Radtke RL & DJ Shafer (1992) Environmental sensitivity of fish otolith microchemistry. Australian Journal of Marine and Freshwater Research 43: 935-951
Shafer DJ (1991) The brown goby, Bathygobius fuscus (Gobiidae): responses to biological and physiochemical intertidal gradients (abstract). Pacific Science 45:102
Radtke RL, AK Kellermann, DJ Shafer & JJ Ruzicka (1989) Early life histories of Antarctic fishes. United States Antarctic Journal 24: 194-196
Radtke RL & DJ Shafer (1988) Age and growth estimates of the commercially important Antarctic fishes Champsocephalus gunnari and Nothenia rossii from South Georgia. United States Antarctic Journal 23: 142-143